Fix stageMask (0x1) usage in various tests

Fix stageMask (0x1) usage in various tests

Pipeline barriers using PIPELINE_STAGE_TOP_OF_PIPE_BIT with nonzero
access mask were modified to use proper pipeline stage flags.

Affects:

dEQP-VK.memory.binding.*
dEQP-VK.pipeline.stencil.*
dEQP-VK.pipeline.blend.*
dEQP-VK.pipeline.depth.*
dEQP-VK.pipeline.image.*
dEQP-VK.pipeline.sampler.*
dEQP-VK.pipeline.image_view.*
dEQP-VK.pipeline.push_constant.*
dEQP-VK.pipeline.multisample.*
dEQP-VK.pipeline.vertex_input.*
dEQP-VK.pipeline.input_assembly.*
dEQP-VK.pipeline.cache.*
dEQP-VK.compute.basic.ssbo_cmd_barrier_single
dEQP-VK.compute.basic.ssbo_cmd_barrier_multiple
dEQP-VK.compute.basic.copy_image_to_ssbo_small
dEQP-VK.compute.basic.copy_image_to_ssbo_large
dEQP-VK.geometry.basic.output_vary_by_texture
dEQP-VK.geometry.basic.output_vary_by_texture_instancing

Components: Vulkan

VK-GL-CTS issue: 806

Change-Id: I99ba8d4818475e096f62121beb247646bc546a9a