icsi makefile for the record

diff --git a/Makefile.icsi b/Makefile.icsi
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+# The makefile for caffe. Extremely hack.
+PROJECT := caffe
+TEST_GPUID := 1
+
+# The target static library and shared library name
+NAME := lib$(PROJECT).so
+STATIC_NAME := lib$(PROJECT).a
+# All source files
+CXX_SRCS := $(shell find src/caffe ! -name "test_*.cpp" -name "*.cpp")
+CU_SRCS := $(shell find src/caffe -name "*.cu")
+TEST_SRCS := $(shell find src/caffe -name "test_*.cpp")
+GTEST_SRC := src/gtest/gtest-all.cpp
+EXAMPLE_SRCS := $(shell find examples -name "*.cpp")
+PROTO_SRCS := $(wildcard src/caffe/proto/*.proto)
+# The generated files for protocol buffers
+PROTO_GEN_HEADER := ${PROTO_SRCS:.proto=.pb.h}
+PROTO_GEN_CC := ${PROTO_SRCS:.proto=.pb.cc}
+PROTO_GEN_PY := ${PROTO_SRCS:.proto=_pb2.py}
+# The objects that are needed to generate the library
+CXX_OBJS := ${CXX_SRCS:.cpp=.o}
+CU_OBJS := ${CU_SRCS:.cu=.cuo}
+PROTO_OBJS := ${PROTO_GEN_CC:.cc=.o}
+OBJS := $(PROTO_OBJS) $(CXX_OBJS) $(CU_OBJS)
+# program and test objects
+EXAMPLE_OBJS := ${EXAMPLE_SRCS:.cpp=.o}
+TEST_OBJS := ${TEST_SRCS:.cpp=.o}
+GTEST_OBJ := ${GTEST_SRC:.cpp=.o}
+# program and test bins
+EXAMPLE_BINS :=${EXAMPLE_OBJS:.o=.bin}
+TEST_BINS := ${TEST_OBJS:.o=.testbin}
+
+# define third-party library paths
+CUDA_DIR := /u/vis/software/cuda-5.5
+CUDA_ARCH := -arch=sm_30
+MKL_DIR := /u/vis/software/dist/intel/composerxe-2011.3.174/mkl
+
+CUDA_INCLUDE_DIR := $(CUDA_DIR)/include
+CUDA_LIB_DIR := $(CUDA_DIR)/lib64 $(CUDA_DIR)/lib
+MKL_INCLUDE_DIR := $(MKL_DIR)/include
+MKL_LIB_DIR := $(MKL_DIR)/lib $(MKL_DIR)/lib/intel64
+
+# define inclue and libaries
+# We put src here just for gtest
+INCLUDE_DIRS := ./src ./include /u/vis/software/include /usr/local/include $(CUDA_INCLUDE_DIR) $(MKL_INCLUDE_DIR)
+LIBRARY_DIRS := /usr/lib /u/vis/software/lib /usr/local/lib $(CUDA_LIB_DIR) $(MKL_LIB_DIR)
+LIBRARIES := cudart cublas protobuf glog mkl_rt curand \
+               leveldb snappy pthread
+WARNINGS := -Wall
+
+COMMON_FLAGS := $(foreach includedir,$(INCLUDE_DIRS),-I$(includedir))
+CXXFLAGS += -pthread -fPIC -O2 $(COMMON_FLAGS)
+NVCCFLAGS := -Xcompiler -fPIC -O2 $(COMMON_FLAGS)
+LDFLAGS += $(foreach librarydir,$(LIBRARY_DIRS),-L$(librarydir)) \
+               $(foreach library,$(LIBRARIES),-l$(library))
+
+NVCC = $(CUDA_DIR)/bin/nvcc $(NVCCFLAGS) $(CPPFLAGS) $(CUDA_ARCH)
+
+.PHONY: all test clean distclean linecount examples distribute
+
+all: $(NAME) $(STATIC_NAME) test examples
+
+linecount: clean
+       cloc --read-lang-def=caffe.cloc src/caffe/
+
+test: $(TEST_BINS)
+
+examples: $(EXAMPLE_BINS)
+
+$(NAME): $(PROTO_OBJS) $(OBJS)
+       $(CXX) -shared $(OBJS) -o $(NAME) $(LDFLAGS) $(WARNINGS)
+
+$(STATIC_NAME): $(PROTO_OBJS) $(OBJS)
+       ar rcs $(STATIC_NAME) $(PROTO_OBJS) $(OBJS)
+
+runtest: test
+       for testbin in $(TEST_BINS); do $$testbin $(TEST_GPUID); done
+
+$(TEST_BINS): %.testbin : %.o $(GTEST_OBJ) $(STATIC_NAME)
+       $(CXX) $< $(GTEST_OBJ) $(STATIC_NAME) -o $@ $(LDFLAGS) $(WARNINGS)
+
+$(EXAMPLE_BINS): %.bin : %.o $(STATIC_NAME)
+       $(CXX) $< $(STATIC_NAME) -o $@ $(LDFLAGS) $(WARNINGS)
+
+$(OBJS): $(PROTO_GEN_CC)
+
+$(EXAMPLE_OBJS): $(PROTO_GEN_CC)
+
+$(CU_OBJS): %.cuo: %.cu
+       $(NVCC) -c $< -o $@
+
+$(PROTO_GEN_CC): $(PROTO_SRCS)
+       protoc --proto_path=src --cpp_out=src --python_out=src $(PROTO_SRCS)
+       mkdir -p include/caffe/proto
+       cp $(PROTO_GEN_HEADER) include/caffe/proto/
+
+clean:
+       @- $(RM) $(NAME) $(STATIC_NAME) $(TEST_BINS) $(EXAMPLE_BINS)
+       @- $(RM) $(OBJS) $(TEST_OBJS) $(EXAMPLE_OBJS)
+       @- $(RM) $(PROTO_GEN_HEADER) $(PROTO_GEN_CC) $(PROTO_GEN_PY)
+       @- $(RM) -rf build
+
+distclean: clean
+
+distribute: all
+       mkdir build
+       cp -r include build/
+       mkdir build/bin
+       cp $(EXAMPLE_BINS) build/bin
+       mkdir build/lib
+       cp $(NAME) build/lib
+       cp $(STATIC_NAME) build/lib